PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G210800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 280aa    MW: 30466.3 Da    PI: 6.1663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G210800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.8e-51111411127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lppGfrFhP+deelv +yL++k++g+      v + +vd++k+ePw+Lp ++  + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd+
  Brast09G210800.1.p  11 LPPGFRFHPRDEELVLDYLCHKLSGTGGGGGGVdMVDVDLNKCEPWELPDEACVGGREWYFFSLHDRKYATGQRTNRATRSGYWKATGKDR 101
                         79************************977767779**************7666789*********************************** PP

                 NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                         e+++    + ++vg++ktLvfy+grapkg+kt+Wvmhe+r
  Brast09G210800.1.p 102 EIVAGsdgEAAVVGMRKTLVFYRGRAPKGSKTQWVMHEFR 141
                         ***987666667***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-563185IPR003441NAC domain
PROSITE profilePS5100554.09311185IPR003441NAC domain
PfamPF023655.6E-2612141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRSMSMVEAR LPPGFRFHPR DEELVLDYLC HKLSGTGGGG GGVDMVDVDL NKCEPWELPD  60
EACVGGREWY FFSLHDRKYA TGQRTNRATR SGYWKATGKD REIVAGSDGE AAVVGMRKTL  120
VFYRGRAPKG SKTQWVMHEF RRADQSTTRR AASAVDDHHQ LLAGRYSFSS TLLEEDWVLC  180
RVFYKSGAGA PPRLPSYDEA EGSLNSDLGL GVALALPMAP AGVAPLPLPS MSFGDLLSDI  240
VQGSSSGPEL AEVDWSVVDG AGGYTRQLIS GMSHTWNPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D2e-46618915172NAC domain-containing protein 19
3swp_C2e-46618915172NAC domain-containing protein 19
3swp_B2e-46618915172NAC domain-containing protein 19
3swp_A2e-46618915172NAC domain-containing protein 19
3swm_D2e-46618915172NAC domain-containing protein 19
3swm_C2e-46618915172NAC domain-containing protein 19
3swm_B2e-46618915172NAC domain-containing protein 19
3swm_A2e-46618915172NAC domain-containing protein 19
4dul_B2e-46618912169NAC domain-containing protein 19
4dul_A2e-46618912169NAC domain-containing protein 19
1ut7_B2e-46618912169NO APICAL MERISTEM PROTEIN
1ut7_A2e-46618912169NO APICAL MERISTEM PROTEIN
1ut4_B2e-46618912169NO APICAL MERISTEM PROTEIN
1ut4_A2e-46618912169NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3704951e-119AK370495.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751258.11e-157PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-65NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0Q3E9T51e-157A0A0Q3E9T5_BRADI; Uncharacterized protein
STRINGSb06g028800.14e-83(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-64NAC family protein